BLAST results
[Archaea] [Bacteria] [Eukaryota] [Viruses] [Metazoa] [green plants] [higher plants] [Others]
BLASTX 2.2.4 [Aug-26-2002]
Query= WTH001_0005_B14.f
(428 letters)
Database: nr-aa
1,542,475 sequences; 498,469,568 total letters
Searching..................................................done
Score E
gpu:SHE410493_67 [AJ410493] gi:30348568 hypothetical protein [S... 31 4.5 Saimiriine herpesvirus 2
spu:V120_SHV21 Capsid assembly protein 63.>sp:V120_HSVSA Capsid ... 31 4.5 Saimiriine herpesvirus 2
gpu:BX571657_326 [BX571657] gi:34482498 PUTATIVE OUTER MEMBRANE... 30 7.7
gp:PFA929355_15 [AL929355] gi:23504918 stevor [Plasmodium falci... 30 7.7 Plasmodium falciparum 3D7
pir:C81624 exodeoxyribonuclease V, beta chain, probable CP0007 [... 30 7.7 Chlamydophila pneumoniae
pir:H72041 exodeoxyribonuclease v, beta - Chlamydophila pneumoni... 30 7.7 Chlamydophila pneumoniae
spu:EX5B_CHLPN Exodeoxyribonuclease V beta chain (EC 3.1.11.5).>... 30 7.7 Chlamydophila pneumoniae
>gpu:SHE410493_67 [AJ410493] gi:30348568 hypothetical protein
[Saimiriine herpesvirus 2]
Length = 898
Score = 30.8 bits (68), Expect = 4.5
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 428 VLYFTPCR--PNKIYFPFNQVKQIQILKVNKAPKGLIVLQNYLSFFIQK*NSKFIIET 261
+ YF+P +KI N V I+ ++ A K L N LSFFI K SK I+ET
Sbjct: 385 LFYFSPTSIGHSKITEILNTVSAIESETLSHANKFSWKLANMLSFFIPKAPSKIILET 442
>spu:V120_SHV21 Capsid assembly protein 63.>sp:V120_HSVSA Capsid
assembly protein 63.>pir:G36812 hypothetical protein
ORF63 - saimiriine herpesvirus 1 (strain
11)>gp:HSGEND_64 [X64346] gi:60384 Saimiriine
herpesvirus 2 complete genome. [Saimiriine herpesvirus
2]>gp:HSV3PRGEN_16 [M86409] gi:330992 Herpesvirus
saimiri the most three prime end of the genome.
[Saimiriine herpesvirus 2]
Length = 899
Score = 30.8 bits (68), Expect = 4.5
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 428 VLYFTPCR--PNKIYFPFNQVKQIQILKVNKAPKGLIVLQNYLSFFIQK*NSKFIIET 261
+ YF+P +KI N V I+ ++ A K L N LSFFI K SK I+ET
Sbjct: 385 LFYFSPTSIGHSKITEILNTVSAIESETLSHANKFSWKLANMLSFFIPKAPSKIILET 442
>gpu:BX571657_326 [BX571657] gi:34482498 PUTATIVE OUTER MEMBRANE
PROTEIN [Wolinella succinogenes]
Length = 743
Score = 30.0 bits (66), Expect = 7.7
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 5/57 (8%)
Frame = -3
Query: 291 EMKFKVYYRDSHFLVSSFIPA-SN*KTNDY----ATLAQSEYCGYLQIALSRRYLKY 136
E K+K YYR+ ++ SS IP S T+DY + S Y Y +++KY
Sbjct: 534 EEKYKPYYREGKYIKSSVIPGLSYDNTDDYYFPHNGIIASAYAEYAGAGGDEKFVKY 590
>gp:PFA929355_15 [AL929355] gi:23504918 stevor [Plasmodium
falciparum 3D7]
Length = 303
Score = 30.0 bits (66), Expect = 7.7
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -3
Query: 279 KVYYRDSHFLVSSFIPASN*KTNDYATLAQSEYCGYLQIALSR---RYLKYVKRRC 121
++++ +SH L S P + KTN+ ++ + ++ ++ +YLK++K RC
Sbjct: 124 EIFHEESHMLKSGRYPNDDDKTNEKSSSCECTDINNTKLTKTKGKDKYLKHLKHRC 179
>pir:C81624 exodeoxyribonuclease V, beta chain, probable CP0007
[imported] - Chlamydophila pneumoniae (strain
AR39)>gp:AE002164_7 [AE002164] gi:7188945
exodeoxyribonuclease V, beta chain, putative
[Chlamydophila pneumoniae AR39]
Length = 1050
Score = 30.0 bits (66), Expect = 7.7
Identities = 12/42 (28%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Frame = +3
Query: 300 KAQIILKDDQTLWSFI---YF*NLNLFYLIEWKVNFVGATGS 416
+ + ++Q LW + +F + +Y+I+WK +F+G T S
Sbjct: 928 ETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFLGETNS 969
>pir:H72041 exodeoxyribonuclease v, beta - Chlamydophila pneumoniae
(strain CWL029)>gp:AE001655_5 [AE001655] gi:4377044
Exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae
CWL029]
Length = 1050
Score = 30.0 bits (66), Expect = 7.7
Identities = 12/42 (28%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Frame = +3
Query: 300 KAQIILKDDQTLWSFI---YF*NLNLFYLIEWKVNFVGATGS 416
+ + ++Q LW + +F + +Y+I+WK +F+G T S
Sbjct: 928 ETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFLGETNS 969
>spu:EX5B_CHLPN Exodeoxyribonuclease V beta chain (EC
3.1.11.5).>sp:EX5B_CHLPN Exodeoxyribonuclease V beta
chain (EC 3.1.11.5).>pir:G86582 exodeoxyribonuclease V,
beta [imported] - Chlamydophila pneumoniae (strain
J138)>gp:AP002547_221 [AP002547] gi:8979110
exodeoxyribonuclease V, beta [Chlamydophila pneumoniae
J138]>gpu:AP002547_221 [AP002547] gi:8979110
exodeoxyribonuclease V, beta [Chlamydophila pneumoniae
J138]
Length = 1050
Score = 30.0 bits (66), Expect = 7.7
Identities = 12/42 (28%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Frame = +3
Query: 300 KAQIILKDDQTLWSFI---YF*NLNLFYLIEWKVNFVGATGS 416
+ + ++Q LW + +F + +Y+I+WK +F+G T S
Sbjct: 928 ETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFLGETNS 969
Database: nr-aa
Posted date: Jul 23, 2004 4:17 PM
Number of letters in database: 498,469,568
Number of sequences in database: 1,542,475
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,096,441
Number of Sequences: 1542475
Number of extensions: 4779933
Number of successful extensions: 7170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7169
length of database: 498,469,568
effective HSP length: 118
effective length of database: 316,457,518
effective search space used: 7594980432
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)