BLAST results
[Archaea] [Bacteria] [Eukaryota] [Viruses] [Metazoa] [green plants] [higher plants] [Others]
BLASTX 2.2.4 [Aug-26-2002]
Query= WTH001_0012_A08.f
(485 letters)
Database: nr-aa
1,542,475 sequences; 498,469,568 total letters
Searching..................................................done
Score E
pir:C81624 exodeoxyribonuclease V, beta chain, probable CP0007 [... 32 5.3 Chlamydophila pneumoniae
pir:H72041 exodeoxyribonuclease v, beta - Chlamydophila pneumoni... 32 5.3 Chlamydophila pneumoniae
spu:EX5B_CHLPN Exodeoxyribonuclease V beta chain (EC 3.1.11.5).>... 32 5.3 Chlamydophila pneumoniae
gp:PFMAL13_276 [AL844509] gi:23615430 hypothetical protein [Pla... 32 5.3 Plasmodium falciparum 3D7
gpu:SHE410493_67 [AJ410493] gi:30348568 hypothetical protein [S... 31 6.9 Saimiriine herpesvirus 2
spu:V120_SHV21 Capsid assembly protein 63.>sp:V120_HSVSA Capsid ... 31 6.9 Saimiriine herpesvirus 2
gp:PFMAL8P1_29 [AL844507] gi:23499017 hypothetical protein [Pla... 31 9.0 Plasmodium falciparum 3D7
>pir:C81624 exodeoxyribonuclease V, beta chain, probable CP0007
[imported] - Chlamydophila pneumoniae (strain
AR39)>gp:AE002164_7 [AE002164] gi:7188945
exodeoxyribonuclease V, beta chain, putative
[Chlamydophila pneumoniae AR39]
Length = 1050
Score = 31.6 bits (70), Expect = 5.3
Identities = 12/42 (28%), Positives = 25/42 (58%), Gaps = 3/42 (7%)
Frame = +1
Query: 241 KAQIILKDDQTLWSLI---YFKNLNLFYLIEWKVNFVGATGS 357
+ + ++Q LW + +F++ +Y+I+WK +F+G T S
Sbjct: 928 ETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFLGETNS 969
>pir:H72041 exodeoxyribonuclease v, beta - Chlamydophila pneumoniae
(strain CWL029)>gp:AE001655_5 [AE001655] gi:4377044
Exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae
CWL029]
Length = 1050
Score = 31.6 bits (70), Expect = 5.3
Identities = 12/42 (28%), Positives = 25/42 (58%), Gaps = 3/42 (7%)
Frame = +1
Query: 241 KAQIILKDDQTLWSLI---YFKNLNLFYLIEWKVNFVGATGS 357
+ + ++Q LW + +F++ +Y+I+WK +F+G T S
Sbjct: 928 ETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFLGETNS 969
>spu:EX5B_CHLPN Exodeoxyribonuclease V beta chain (EC
3.1.11.5).>sp:EX5B_CHLPN Exodeoxyribonuclease V beta
chain (EC 3.1.11.5).>pir:G86582 exodeoxyribonuclease V,
beta [imported] - Chlamydophila pneumoniae (strain
J138)>gp:AP002547_221 [AP002547] gi:8979110
exodeoxyribonuclease V, beta [Chlamydophila pneumoniae
J138]>gpu:AP002547_221 [AP002547] gi:8979110
exodeoxyribonuclease V, beta [Chlamydophila pneumoniae
J138]
Length = 1050
Score = 31.6 bits (70), Expect = 5.3
Identities = 12/42 (28%), Positives = 25/42 (58%), Gaps = 3/42 (7%)
Frame = +1
Query: 241 KAQIILKDDQTLWSLI---YFKNLNLFYLIEWKVNFVGATGS 357
+ + ++Q LW + +F++ +Y+I+WK +F+G T S
Sbjct: 928 ETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFLGETNS 969
>gp:PFMAL13_276 [AL844509] gi:23615430 hypothetical protein
[Plasmodium falciparum 3D7]>gpu:PFMAL13_276 [AL844509]
gi:23615430 hypothetical protein [Plasmodium falciparum
3D7]
Length = 1004
Score = 31.6 bits (70), Expect = 5.3
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -2
Query: 319 SNKTNSNF*SKLSSKGSDRPSKLSELFHSEMKFKVYYRDSHFLVSSFIPASN*KTNDYAT 140
+N N+N + SSKGS + + H E K K+ + + + A+ + DY+
Sbjct: 853 NNNNNNNNNNNYSSKGSIQRTNYQNPIHDEDKIKIQKLMQSYEKADYTQANLYNSEDYSN 912
Query: 139 LAQSEFCGYLQIALSRRYLKYVK 71
++F I LS+ LK K
Sbjct: 913 QTCNKFFENSYIKLSKSTLKNEK 935
>gpu:SHE410493_67 [AJ410493] gi:30348568 hypothetical protein
[Saimiriine herpesvirus 2]
Length = 898
Score = 31.2 bits (69), Expect = 6.9
Identities = 24/64 (37%), Positives = 32/64 (49%), Gaps = 2/64 (3%)
Frame = -3
Query: 387 DCFKKRVLYFTPCR--PNKIYFPFNQIKQIQIFKVN*APKGLIVLQNYLSFFTQK*NSKF 214
D F K + YF+P +KI N + I+ ++ A K L N LSFF K SK
Sbjct: 379 DFFYKCLFYFSPTSIGHSKITEILNTVSAIESETLSHANKFSWKLANMLSFFIPKAPSKI 438
Query: 213 IIET 202
I+ET
Sbjct: 439 ILET 442
>spu:V120_SHV21 Capsid assembly protein 63.>sp:V120_HSVSA Capsid
assembly protein 63.>pir:G36812 hypothetical protein
ORF63 - saimiriine herpesvirus 1 (strain
11)>gp:HSGEND_64 [X64346] gi:60384 Saimiriine
herpesvirus 2 complete genome. [Saimiriine herpesvirus
2]>gp:HSV3PRGEN_16 [M86409] gi:330992 Herpesvirus
saimiri the most three prime end of the genome.
[Saimiriine herpesvirus 2]
Length = 899
Score = 31.2 bits (69), Expect = 6.9
Identities = 24/64 (37%), Positives = 32/64 (49%), Gaps = 2/64 (3%)
Frame = -3
Query: 387 DCFKKRVLYFTPCR--PNKIYFPFNQIKQIQIFKVN*APKGLIVLQNYLSFFTQK*NSKF 214
D F K + YF+P +KI N + I+ ++ A K L N LSFF K SK
Sbjct: 379 DFFYKCLFYFSPTSIGHSKITEILNTVSAIESETLSHANKFSWKLANMLSFFIPKAPSKI 438
Query: 213 IIET 202
I+ET
Sbjct: 439 ILET 442
>gp:PFMAL8P1_29 [AL844507] gi:23499017 hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2399
Score = 30.8 bits (68), Expect = 9.0
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 124 ILTVLR*HNH*SFNWRLV*MTRRENDCLYNKL*ISFLSEKAQIILKDD-QTLWSLIYFKN 300
+L +LR N FN + V MT + DC+Y K + L LK + +++ FKN
Sbjct: 799 LLNLLRDININRFNIKHV-MTSK--DCMYEKFMLYNLFSYNITCLKSSLKMMYAYCLFKN 855
Query: 301 LNLFYLIEWK 330
L LFY I++K
Sbjct: 856 LKLFYQIQYK 865
Database: nr-aa
Posted date: Jul 23, 2004 4:17 PM
Number of letters in database: 498,469,568
Number of sequences in database: 1,542,475
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,500,550
Number of Sequences: 1542475
Number of extensions: 6033635
Number of successful extensions: 9808
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9803
length of database: 498,469,568
effective HSP length: 114
effective length of database: 322,627,418
effective search space used: 15163488646
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)